| 09/02/06 | at | Alabama | 17-25 |
| 09/16/06 | hosting | UNLV | 42-13 |
| 09/23/06 | at | Boise St | 34-41 |
| 09/30/06 | hosting | Eastern Illinois | 44-9 |
| 10/07/06 | hosting | Nevada | 41-34 |
| 10/14/06 | at | Fresno St | 68-37 |
| 10/21/06 | at | New Mexico St | 49-30 |
| 10/28/06 | hosting | Idaho | 68-10 |
| 11/04/06 | at | Utah St | 63-10 |
| 11/11/06 | hosting | Louisiana Tech | 61-17 |
| 11/18/06 | hosting | San José St | 54-17 |
| 11/25/06 | hosting | Purdue | 42-35 |
| 12/02/06 | hosting | Oregon St | 32-35 |
| 12/24/06 | hosting | Arizona St | 41-24 |