| 09/02/06 | at | Rocky Mountain | 23-27 |
| 09/09/06 | hosting | Bemidji St | 9-30 |
| 09/16/06 | hosting | Black Hills St | 2-6 |
| 09/23/06 | hosting | South Dakota Tech | 30-0 |
| 09/30/06 | at | Dickinson St | 0-3 |
| 10/07/06 | hosting | Mayville St | 41-0 |
| 10/14/06 | at | Valley City St | 19-14 |
| 10/21/06 | hosting | Dakota St | 30-3 |
| 10/28/06 | at | Jamestown | 0-3 |
| 11/04/06 | at | Black Hills St | 3-35 |