| 09/02/06 | hosting | Waynesburg | 41-14 |
| 09/09/06 | hosting | Averett | 38-17 |
| 09/16/06 | hosting | Seton Hill | 49-13 |
| 09/30/06 | at | Huntingdon | 38-17 |
| 10/07/06 | at | Frostburg St | 32-7 |
| 10/14/06 | hosting | Apprentice | 41-7 |
| 10/21/06 | hosting | Brockport St | 48-17 |
| 10/28/06 | at | Salisbury | 13-10 |
| 11/04/06 | hosting | Chowan | 37-3 |
| 11/11/06 | hosting | Morrisville St | 53-14 |
| 11/18/06 | hosting | Dickinson | 49-21 |
| 11/25/06 | hosting | Carnegie Mellon | 37-0 |
| 12/02/06 | hosting | Mary Hardin-Baylor | 34-20 |
| 12/09/06 | at | UW-Whitewater | 7-44 |