| 09/02/06 | hosting | Utah St | 38-7 |
| 09/09/06 | at | Virginia | 12-13 OT |
| 09/16/06 | hosting | Boise St | 10-17 |
| 09/23/06 | hosting | Air Force | 24-31 |
| 09/30/06 | at | Syracuse | 34-40 2OT |
| 10/07/06 | at | New Mexico | 14-10 |
| 10/14/06 | hosting | Utah | 31-15 |
| 10/21/06 | hosting | Colorado St | 24-0 |
| 10/28/06 | at | TCU | 3-26 |
| 11/04/06 | hosting | San Diego St | 27-24 |
| 11/09/06 | at | Brigham Young | 7-55 |
| 11/18/06 | at | UNLV | 34-26 |