| 09/02/06 | at | Mississippi Valley St | 0-10 |
| 09/09/06 | hosting | Alcorn St | 42-14 |
| 09/16/06 | at | Alabama St | 13-31 |
| 09/23/06 | hosting | Southern Illinois | 16-48 |
| 09/30/06 | hosting | Tuskegee | 35-19 |
| 10/14/06 | hosting | Grambling St | 33-28 |
| 10/21/06 | hosting | Alabama A&M | 23-21 |
| 10/28/06 | hosting | Jackson St | 43-40 |
| 11/04/06 | at | Prairie View A&M | 28-21 |
| 11/11/06 | at | Southern U. | 45-20 |
| 11/18/06 | hosting | Texas Southern | 42-31 |
| 12/16/06 | at | Alabama A&M | 13-22 |