| 08/31/06 | hosting | Lock Haven | 49-0 |
| 09/16/06 | at | Indiana | 35-28 |
| 09/23/06 | at | Arkansas-Pine Bluff | 48-16 |
| 09/30/06 | hosting | Indiana St | 55-3 |
| 10/07/06 | hosting | Western Illinois | 31-24 |
| 10/14/06 | at | Illinois St | 10-37 |
| 10/21/06 | hosting | Western Kentucky | 24-27 |
| 10/28/06 | at | Missouri St | 27-17 |
| 11/04/06 | at | Youngstown St | 24-31 |
| 11/11/06 | hosting | Northern Iowa | 47-23 |
| 11/18/06 | hosting | Southern Utah | 59-0 |
| 11/25/06 | hosting | Tennessee-Martin | 36-30 |
| 12/02/06 | at | Montana | 3-20 |