| 08/31/06 | at | Middle Tennessee St | 6-7 |
| 09/09/06 | at | South Florida | 20-21 |
| 09/16/06 | hosting | Bowling Green | 28-33 |
| 09/23/06 | at | Maryland | 10-14 |
| 09/30/06 | hosting | Arkansas St | 6-31 |
| 10/07/06 | at | North Texas | 22-25 7OT |
| 10/14/06 | at | Miami FL | 0-35 |
| 10/28/06 | at | Alabama | 3-38 |
| 11/11/06 | hosting | Louisiana-Monroe | 0-35 |
| 11/18/06 | hosting | Louisiana-Lafayette | 7-17 |
| 11/25/06 | hosting | Florida Atlantic | 0-31 |
| 12/02/06 | hosting | Troy | 13-26 |