| 09/02/06 | at | Colorado | 19-10 |
| 09/09/06 | hosting | Chadron St | 24-35 |
| 09/16/06 | hosting | UC-Davis | 0-45 |
| 09/23/06 | hosting | Eastern Washington | 10-19 |
| 09/30/06 | at | Northern Arizona | 39-32 |
| 10/07/06 | hosting | Portland St | 14-0 |
| 10/14/06 | at | Sacramento St | 21-18 |
| 10/21/06 | at | Idaho St | 42-35 |
| 10/28/06 | hosting | Weber St | 24-18 |
| 11/04/06 | hosting | Northern Colorado | 13-10 |
| 11/18/06 | at | Montana | 7-13 |
| 11/25/06 | hosting | Furman | 31-13 |
| 12/02/06 | at | Appalachian St | 17-38 |