| 09/02/06 | at | Colorado St | 6-30 |
| 09/09/06 | hosting | Cal Poly SLO | 0-17 |
| 09/16/06 | hosting | Southern Utah | 24-13 |
| 09/23/06 | hosting | Portland St | 10-20 |
| 09/28/06 | hosting | Northern Colorado | 26-21 |
| 10/07/06 | at | Sacramento St | 21-24 |
| 10/21/06 | hosting | Montana | 30-33 |
| 10/28/06 | at | Montana St | 18-24 |
| 11/04/06 | hosting | Eastern Washington | 19-14 |
| 11/11/06 | at | Northern Arizona | 17-42 |
| 11/18/06 | at | Idaho St | 30-27 |