| 09/01/06 | hosting | North Dakota | 14-28 |
| 09/09/06 | at | Humboldt St | 20-0 |
| 09/16/06 | at | Eastern Washington | 21-14 |
| 09/23/06 | at | Minnesota-Duluth | 25-31 |
| 09/30/06 | hosting | St Cloud St | 24-14 |
| 10/07/06 | at | South Dakota | 7-10 |
| 10/14/06 | hosting | Western Oregon | 28-21 |
| 10/21/06 | at | Western Washington | 42-28 |
| 10/28/06 | at | Augustana SD | 34-28 |
| 11/04/06 | hosting | Minn St-Mankato | 17-33 |
| 11/11/06 | at | Nebraska-Omaha | 14-48 |