| 09/02/06 | at | Georgia | 12-48 |
| 09/09/06 | at | Eastern Kentucky | 21-26 |
| 09/16/06 | hosting | Chattanooga | 28-21 |
| 09/30/06 | hosting | Western Illinois | 38-35 |
| 10/07/06 | hosting | Illinois St | 27-28 |
| 10/14/06 | at | Missouri St | 17-14 |
| 10/21/06 | at | Southern Illinois | 27-24 |
| 10/28/06 | hosting | Indiana St | 41-3 |
| 11/04/06 | at | Northern Iowa | 20-31 |
| 11/11/06 | hosting | Youngstown St | 3-19 |
| 11/18/06 | hosting | Austin Peay | 24-14 |