| 09/02/06 | at | Grambling St | 27-26 |
| 09/09/06 | hosting | Howard | 46-7 |
| 09/16/06 | hosting | North Carolina A&T | 48-14 |
| 09/23/06 | at | Morgan St | 26-7 |
| 09/30/06 | at | Delaware St | 29-14 |
| 10/07/06 | at | Central St OH | 42-12 |
| 10/14/06 | hosting | Norfolk St | 42-13 |
| 10/21/06 | at | South Carolina St | 6-13 |
| 10/28/06 | hosting | Winston-Salem St | 13-3 |
| 11/02/06 | hosting | Bethune-Cookman | 34-17 |
| 11/11/06 | at | Florida A&M | 59-7 |
| 11/25/06 | hosting | New Hampshire | 38-41 |