| 09/09/06 | at | Hampton | 7-46 |
| 09/16/06 | hosting | Florida A&M | 23-31 |
| 09/23/06 | at | Rutgers | 7-56 |
| 09/30/06 | hosting | Fort Valley St | 34-19 |
| 10/07/06 | at | Winston-Salem St | 0-12 |
| 10/14/06 | hosting | Morgan St | 12-18 |
| 10/21/06 | at | North Carolina A&T | 26-0 |
| 10/28/06 | hosting | Norfolk St | 13-10 |
| 11/04/06 | at | South Carolina St | 10-28 |
| 11/11/06 | at | Bethune-Cookman | 28-0 |
| 11/18/06 | hosting | Delaware St | 20-17 |