| 09/02/06 | at | Wofford | 21-28 |
| 09/09/06 | at | Winston-Salem St | 35-6 |
| 09/16/06 | hosting | Bethune-Cookman | 21-45 |
| 09/23/06 | at | Coastal Carolina | 14-33 |
| 10/07/06 | hosting | Norfolk St | 47-10 |
| 10/14/06 | at | Florida A&M | 28-21 |
| 10/21/06 | hosting | Hampton | 13-6 |
| 10/28/06 | at | Delaware St | 9-10 |
| 11/04/06 | hosting | Howard | 28-10 |
| 11/11/06 | at | Morgan St | 41-16 |
| 11/18/06 | at | North Carolina A&T | 41-19 |