| 09/02/06 | hosting | Gardner-Webb | 14-49 |
| 09/16/06 | at | SE Louisiana St | 13-41 |
| 09/23/06 | at | Butler | 31-7 |
| 09/30/06 | at | Valparaiso | 34-17 |
| 10/07/06 | at | Davidson | 3-38 |
| 10/14/06 | hosting | Dayton | 28-21 |
| 10/21/06 | at | Morehead St | 28-24 |
| 10/28/06 | at | North Greenville | 6-41 |
| 11/04/06 | hosting | San Diego | 21-38 |
| 11/11/06 | hosting | Drake | 28-47 |