| 08/31/06 | at | New Mexico St | 15-30 |
| 09/09/06 | at | Southern Miss | 0-45 |
| 09/16/06 | hosting | Jacksonville FL | 41-13 |
| 09/23/06 | at | Texas Tech | 0-62 |
| 09/30/06 | hosting | Gardner-Webb | 21-28 |
| 10/07/06 | at | Nicholls St | 10-14 |
| 10/14/06 | hosting | Northwestern St | 31-24 |
| 10/21/06 | at | Texas St-San Marcos | 17-38 |
| 10/28/06 | hosting | Stephen F. Austin | 10-35 |
| 11/04/06 | at | McNeese St | 13-34 |
| 11/11/06 | hosting | Sam Houston St | 23-28 |