| 09/02/06 | hosting | Minn St-Mankato | 31-14 |
| 09/09/06 | hosting | Nebraska-Omaha | 31-0 |
| 09/16/06 | at | Truman St | 31-10 |
| 09/23/06 | hosting | Missouri Western | 24-21 |
| 09/30/06 | at | Missouri Southern | 24-7 |
| 10/07/06 | hosting | Emporia St | 49-17 |
| 10/14/06 | at | Washburn | 31-26 |
| 10/21/06 | hosting | Fort Hays St | 59-0 |
| 10/28/06 | at | Central Missouri | 31-14 |
| 11/04/06 | hosting | Pittsburg St | 41-14 |
| 11/11/06 | at | SW Baptist | 55-9 |
| 11/25/06 | hosting | Midwestern St | 27-0 |
| 12/02/06 | hosting | Chadron St | 28-21 |
| 12/10/06 | hosting | Bloomsburg | 33-3 |
| 12/16/06 | at | Grand Valley St | 14-17 |