| 09/02/06 | hosting | Nebraska-Kearney | 29-19 |
| 09/09/06 | at | NW Missouri St | 0-31 |
| 09/16/06 | at | Western Washington | 38-10 |
| 09/23/06 | hosting | Augustana SD | 59-28 |
| 09/30/06 | at | Minn St-Mankato | 21-14 |
| 10/14/06 | hosting | North Dakota | 21-20 |
| 10/21/06 | at | Minnesota-Duluth | 38-14 |
| 10/28/06 | hosting | St Cloud St | 21-17 |
| 11/04/06 | at | South Dakota | 28-45 |
| 11/11/06 | hosting | Central Washington | 48-14 |
| 11/25/06 | hosting | North Dakota | 35-38 |