| 09/02/06 | hosting | Montana Tech | 34-0 |
| 09/09/06 | hosting | Western St CO | 55-3 |
| 09/16/06 | at | Weber St | 13-24 |
| 09/23/06 | hosting | Texas St-San Marcos | 30-21 |
| 09/30/06 | at | Cal Poly SLO | 14-18 |
| 10/07/06 | at | McNeese St | 27-30 |
| 10/12/06 | at | Florida Atlantic | 7-32 |
| 10/21/06 | at | UC-Davis | 7-27 |
| 10/28/06 | hosting | North Dakota St | 7-31 |
| 11/11/06 | hosting | South Dakota St | 21-31 |
| 11/18/06 | at | Southern Illinois | 0-59 |