| 09/02/06 | hosting | Truman St | 24-13 |
| 09/09/06 | at | Emporia St | 21-18 |
| 09/16/06 | at | North Dakota | 2-49 |
| 09/23/06 | hosting | Upper Iowa | 48-7 |
| 09/30/06 | at | Concordia-St Paul | 24-17 |
| 10/07/06 | hosting | Minn St-Moorhead | 32-19 |
| 10/14/06 | at | Northern St SD | 23-15 |
| 10/21/06 | at | Bemidji St | 7-28 |
| 10/28/06 | hosting | Minnesota-Crookston | 30-0 |
| 11/04/06 | hosting | SW Minnesota St | 34-3 |
| 11/11/06 | hosting | Wayne St NE | 31-3 |
| 11/18/06 | at | North Dakota | 0-42 |