| 09/02/06 | hosting | Alabama A&M | 20-27 |
| 09/09/06 | hosting | Murray St | 25-15 |
| 09/16/06 | hosting | Jackson St | 31-30 |
| 09/23/06 | at | Vanderbilt | 9-38 |
| 09/30/06 | hosting | Florida A&M | 22-25 |
| 10/14/06 | hosting | Tennessee Tech | 30-20 |
| 10/21/06 | at | Jacksonville St | 38-31 |
| 10/28/06 | hosting | Samford | 29-7 |
| 11/04/06 | at | Eastern Illinois | 3-29 |
| 11/11/06 | hosting | SE Missouri St | 31-0 |
| 11/18/06 | at | Eastern Kentucky | 3-20 |