| 09/02/06 | at | Austin Peay | 38-13 |
| 09/09/06 | hosting | Missouri-Rolla | 44-23 |
| 09/16/06 | at | Jacksonville St | 7-38 |
| 09/30/06 | hosting | Samford | 19-14 |
| 10/07/06 | at | Eastern Illinois | 0-21 |
| 10/14/06 | at | Arkansas | 7-63 |
| 10/21/06 | hosting | Eastern Kentucky | 21-27 |
| 10/28/06 | at | Murray St | 24-17 |
| 11/04/06 | hosting | Tennessee-Martin | 14-28 |
| 11/11/06 | at | Tennessee St | 0-31 |
| 11/18/06 | hosting | Tennessee Tech | 29-32 |