| 09/02/06 | hosting | Tarleton St | 27-23 |
| 09/09/06 | at | Kentucky | 7-41 |
| 09/16/06 | hosting | Northern Colorado | 13-14 |
| 09/23/06 | at | Southern Utah | 21-30 |
| 10/07/06 | hosting | Stephen F. Austin | 13-24 |
| 10/14/06 | at | McNeese St | 27-17 |
| 10/21/06 | hosting | SE Louisiana St | 38-17 |
| 10/28/06 | at | Northwestern St | 10-19 |
| 11/02/06 | hosting | Nicholls St | 19-21 |
| 11/11/06 | hosting | Texas Southern | 41-21 |
| 11/18/06 | at | Sam Houston St | 28-21 |